Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs6765277 | chr3:56546716 | T/C | 5.88E-5 | 488 | 16.63 | 13.7 | 8.97 | KM Plot |
| THCA | rs67662439 | chr22:25476062 | C/A | 3.97E-6 | 470 | 16.13 | 16.37 | 10.63 | KM Plot |
| THCA | rs6767447 | chr3:157557263 | T/C | 5.45E-5 | 476 | 21 | 17.63 | 15 | KM Plot |
| THCA | rs6768724 | chr3:155654823 | A/G | 0.000203 | 488 | 9 | 14.63 | 16.47 | KM Plot |
| THCA | rs67730226 | chr6:153283895 | A/G | 0 | 488 | 15.17 | 18.32 | 6.92 | KM Plot |
| THCA | rs67736570 | chr1:63654256 | C/T | 0.000111 | 474 | 15.08 | 15.9 | 19.13 | KM Plot |
| THCA | rs6777918 | chr3:127669445 | G/C | 0 | 490 | 16.37 | 14.82 | 6.03 | KM Plot |
| THCA | rs6778748 | chr3:157557262 | A/G | 5.45E-5 | 476 | 21 | 17.63 | 15 | KM Plot |
| THCA | rs67812366 | chr11:93648896 | C/T | 0.000224 | 489 | 15.15 | 18.05 | 16.63 | KM Plot |
| THCA | rs6783092 | chr3:157566764 | T/C | 2.23E-5 | 485 | 15.32 | 16.8 | 15.77 | KM Plot |
| THCA | rs67856760 | chr6:153281762 | G/A | 0 | 489 | 15.17 | 18.33 | 6.92 | KM Plot |
| THCA | rs67950027 | chr4:3152786 | A/C | 3.64E-7 | 468 | 16.8 | 14.25 | 15.2 | KM Plot |
| THCA | rs6799216 | chr3:157576580 | T/A | 2.46E-5 | 486 | 15.32 | 15.9 | 15.83 | KM Plot |
| THCA | rs6801621 | chr3:96807766 | G/A | 2.34E-10 | 489 | 15.93 | 15.17 | 24.65 | KM Plot |
| THCA | rs6801624 | chr3:96807782 | C/G | 2.27E-10 | 490 | 24.65 | 15.42 | 15.9 | KM Plot |